8-spot kinetics

This notebook coordinates the execution of the realtime-kinetics analysis for the 3 multispot measurements of RNAP open-complex to run-off (bubbble-bubble labeling). A single template notebook is executed 3 times, one for each measurement.

Boilerplate

The module nbrun.py needs to be in the current folder:



In [1]:

    
from nbrun import run_notebook

Execute notebooks



In [2]:

    
nb_name = '8-spot bubble-bubble kinetics - Template'
out_path = 'out_notebooks'
windows = (5, 30, 60)



In [4]:

    
for meas_id in (0, 1, 2):
    nb_kwargs = {'measurement_id': meas_id, 'windows': windows}
    run_notebook(nb_name, nb_suffix='-out_%d' % meas_id, out_path=out_path,
                 nb_kwargs=nb_kwargs)









    




Source Notebook: 8-spot bubble-bubble kinetics - Template.ipynb







    




Output Notebook: out_notebooks/8-spot bubble-bubble kinetics - Template-out_0.ipynb







    




Source Notebook: 8-spot bubble-bubble kinetics - Template.ipynb







    




Output Notebook: out_notebooks/8-spot bubble-bubble kinetics - Template-out_1.ipynb







    




Source Notebook: 8-spot bubble-bubble kinetics - Template.ipynb







    




Output Notebook: out_notebooks/8-spot bubble-bubble kinetics - Template-out_2.ipynb



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